I used crates for awhile but stuff got cluttered in there. I ended up keeping them mainly for a place to hold my anchor and something to attach PVC rod holders to.
If you have a center hatch between your legs that has access to the hull, you can string a rope around the scuppers and tie some loops in it. Then you attach some small dry bags to the loops with carabiners, and put your lures, sunscreen, etc in the bags. Then when you need something you just open the hatch and slide the rope around till the bag you need is in reach. That was my favorite way to rig after trying a bunch of other ways.
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